Programs in the AIR package

• generate new .air files
• modify or combine .air files
• generate or modify header files
• generate new image files
• display information about a file
• create initialization files
• use or create binary files

• Programs that will generate new .air files
  • alignlinear (all forms of registration)
  • manualreslice (trial and error registration)
  • alignmritopet (old AIR 1.0 algorithm)
  • alignpettomri (old AIR 1.0 algorithm)
  • alignpettopet (old AIR 1.0 algorithm)
• Programs that will modify or combine .air files
  • cd_air (change target directory)
  • combine_air (combine multiple .air files)
  • definecommon_air (average together .air files)
  • invert_air (interconvert reslice file and standard file)
  • mv_air (change reslice file)
  • reconcile_air (resolve inconsistencies between .air files)
• Programs that will generate or modify header files
  • fixheader (correct header voxel sizes)
  • makeaheader (create new header)
  • setheadermax (change header maximum)
• Programs that will generate image files
  • layout (composite multiple slices onto a single 2D image)
  • magnify (Fourier interpolation to increase number of pixels)
  • manualreslice (arbitrary repositioning)
  • reorient (rotate 90 or 180 degrees or mirror image)
  • resize (clip, shift or pad data to change matrix size)
  • reslice (reposition based on .air file)
  • reunite (combine single slices into multivolume data set)
  • separate (split multivolume data into single slices)
  • softmean (average files together)
  • zoomer (interpolate file to cubic voxels)
• Programs that will display information about a file
  • identify (compute hash value, verify header and image compatibility)
  • scanair (display contents of .air file)
  • scanheader (display contents of header file)
• Programs that will create initialization files
  • manualreslice
• Programs that will use or create binary files
  • binarize (use threshold to convert non-binary file to binary file)
  • binarymask (apply binary file to mask non-binary file)
  • binarymath (combine or compare binary files to create new binary file)