Program index

• alignlinear (AIR 2.0 automated intramodality registration both within and across subjects)
• alignmritopet (old AIR 1.0 intermodality registration)
• alignpettomri (old AIR 1.0 intermodality registration)
• alignpettopet (old AIR 1.0 intramodality registration)
• binarize (converts 8 or 16 bit file to a binary file)
• binarymask (applies a binary mask to a file)
• binarymath (performs binary operations on pairs of binary input files)
• cd_air (changes .air file's target directory)
• combine_air (combines multiple .air files)
• definecommon_air (finds a good common space for data analysis based on .air files)
• fixheader (corrects header file's voxel sizes)
• gsmooth (Gaussian convolution)
• identify (computes hash value, verifies header and image compatibility)
• invert_air (interconverts .air file's reslice file and standard file)
• layout (creates 2D layout of 3D data)
• magnify (magnifies images using Fourier interpolation)
• makeaheader (creates new header files)
• manualreslice (trial and error registration, creates initialization files)
• mv_air (changes .air file's reslice file)
• reconcile_air (reconciles discrepancies between a series of .air files defining all possible pairwise registrations)
• reorient (rotates file 90 or 180 degrees or creates file's mirror image)
• resize (changes file's matrix size and/or shifts file within matrix)
• reslice (reslices data based on specified .air file)
• reunite (joins multiple 2D files into a single 3D file)
• scanair (displays contents of .air file)
• scanheader (displays contents of header file)
• separate (cuts a 3D volume into multiple 2D files)
• setheadermax (changes header file's maximum)
• sizeof (displays C variable sizes)
• softmean (averages files together compensating for missing data)
• zoomer (interpolates file to cubic voxels)